Welcome to the Patiria miniata genome portal.
Browse the genome through the JBrowse
Search for specific elements through the GENOMA Query page
Patiria miniata download information:
in the following table there are downloadable information about genome assembly and annotation per each available source (NCBI and ECHINOBASE).
|Source||Genome Assembly (FASTA file)||Gene Annotation (GFF3 file)||Gene Annotation (TXT file)||Gene Sequences (FASTA file)||mRNA Sequences (FASTA file)||Protein Sequences (FASTA file)||INTERPRO results (TXT file)|
Genome Assembly: FASTA file of all the chromosome/scaffolds/contigs;
Gene Annotation: GFF file containing information about all the annotated genes, mRNAs, UTRs, CDSs;
Gene Annotation: TXT file containing information ONLY about the annotated genes (Gene ID, chromosome, start, end, strand, functional annotation);
Gene Sequences: FASTA file of all the gene sequences;
mRNA Sequences: FASTA file of all the mRNA sequences;
Protein Sequences: FASTA file of all the protein sequences;
INTERPRO results: TXT file containing the INTERPROSCAN results (Gene ID, Interpro, PFAM, Panther, Pathways).
Patiria miniata gene content quick view:
in the following table there are reported all the annotated genes (Gene ID) per available sources (Source), their position on the genome (Chromosome, Start, End, Strand) and their annotation (where available). It is also possible search by keyword in the “Search” box, order and filter the columns. Direct link of the gene selected to the JBrowse is also available.