- a JBrowse built based on the genome assembly sequences from Ensembl;
- the gene annotation version from Ensembl;
- all the available ESTs downloaded from dbEST.
Search for specific elements through the dedicated Query page.
- BROAD S1 from Ensembl.
Notes from BIOINforMA:
a genome assembly is available also on NCBI but the assembly version is very old (contigs level) and without a gene annotation.
- version 95 from Ensembl.
|Source||Genome Assembly (FASTA-big file)||Gene Annotation (GFF3)||Gene Sequences (FASTA)||mRNA Sequences (FASTA)||Protein Sequences (FASTA)|
|Ensembl||BROAD S1||v. 95||download||download||download|
Genome Assembly: FASTA file of all the chromosome/scaffolds/contigs;
Gene Annotation: GFF file containing information about all the annotated genes, mRNAs, UTRs, CDSs;
Gene Sequences: FASTA file of all the gene sequences;
mRNA Sequences: FASTA file of all the mRNA sequences;
Protein Sequences: FASTA file of all the protein sequences.