Gasterosteus aculeatus genome portal
JBrowse – Query page – Genome content overview – Gene content overview – Download section
A Genome Browser access point is available and it includes:
- a JBrowse built based on the genome assembly sequences from Ensembl;
- the gene annotation version from Ensembl;
- all the available ESTs downloaded from dbEST.
Search for specific elements through the dedicated Query page.
Genome content overview:
the following genome assemblies are available in the platform:
- BROAD S1 from Ensembl.
Notes from BIOINforMA:
a genome assembly is available also on NCBI but the assembly version is very old (contigs level) and without a gene annotation.
Gene content overview:
the following gene annotation is available in the platform:
- version 95 from Ensembl.
| Source | Genome Assembly (FASTA-big file) | Gene Annotation (GFF3) | Gene Sequences (FASTA) | mRNA Sequences (FASTA) | Protein Sequences (FASTA) |
| Ensembl | BROAD S1 | v. 95 | download | download | download |
Genome Assembly: FASTA file of all the chromosome/scaffolds/contigs;
Gene Annotation: GFF file containing information about all the annotated genes, mRNAs, UTRs, CDSs;
Gene Sequences: FASTA file of all the gene sequences;
mRNA Sequences: FASTA file of all the mRNA sequences;
Protein Sequences: FASTA file of all the protein sequences.