Pseudo-nitzschia multistriata genome portal
JBrowse – Gene content overview – BLAST service – Download section – References
JBrowse
A genome browser is available here.
Gene content overview
Annotated genes (Name), their location (Scaffolds, Start, End, Strand) and their functional annotation (when available) are included.
Search by keywords (in the “Search” box), Sorting and Filtering are available. Crosslinks to the genome browser of selected genes are also available.
BLAST service
Align one or more FASTA sequences versus the P. multistriata genome, mRNAs and proteins (version 1.4).
References for Data and Methods
– Basu S., Patil S., Mapleson D., Russo M.T., Vitale L., Fevola C., Maumus F., Casotti R., Mock T., Caccamo M., Montresor M., Sanges R., Ferrante M.I.. Finding a partner in the ocean: molecular and evolutionary bases of the response to sexual cues in a planktonic diatom. New Phytologist (2017) 215: 140–156. doi: 10.1111/nph.14557
– Russo M. T., Vitale L., Entrambasaguas L., Anestis K., Fattorini N., Romano F., Minucci C., De Luca P., Biffali E., Vyverman W., Sanges R., Montresor M., Ferrante M.I.. MRP3 is a sex determining gene in the diatom Pseudo-nitzschia multistriata. Nature Comunications (2018) 9: 5050. doi: 10.1038/s41467-018-07496-0
Acknowledgements:
The “GENOMA” platform is an effort from the BIOINforMA-tics service @ Stazione Zoologica Anton Dorhn, Naples