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Pseudo-nitzschia multistriata genome portal
JBrowseGene content overviewBLAST serviceDownload section – References

 


JBrowse
A genome browser is available here.


Gene content overview
Annotated genes (Name), their location (Scaffolds, Start, End, Strand) and their functional annotation (when available) are included.
Search by keywords (in the “Search” box), Sorting and Filtering are available. Crosslinks to the genome browser of selected genes are also available.


BLAST service
Align one or more FASTA sequences versus the P. multistriata genome, mRNAs and proteins (version 1.4).


Download section


Genome Assembly (FASTA-large file) Gene Annotation (GFF3) Gene Annotation (CSV) mRNA Sequences (FASTA) Protein Sequences (FASTA)
Download Download Download Download Download

Genome Assembly: FASTA file of all the chromosome/scaffolds/contigs;
Gene Annotation: GFF file containing information about all the annotated genes, mRNAs, UTRs, CDSs;
Gene Annotation: CSV file containing information ONLY about the annotated genes (Gene ID, chromosome, start, end, strand, functional annotation);
mRNA Sequences: FASTA file of all the mRNA sequences;
Protein Sequences: FASTA file of all the protein sequences.


References for Data and Methods
– Basu S., Patil S., Mapleson D., Russo M.T., Vitale L., Fevola C., Maumus F., Casotti R., Mock T., Caccamo M., Montresor M., Sanges R., Ferrante M.I.. Finding a partner in the ocean: molecular and evolutionary bases of the response to sexual cues in a planktonic diatom. New Phytologist (2017) 215: 140–156. doi: 10.1111/nph.14557

– Russo M. T., Vitale L., Entrambasaguas L., Anestis K., Fattorini N., Romano F., Minucci C., De Luca P., Biffali E., Vyverman W., Sanges R., Montresor M., Ferrante M.I.. MRP3 is a sex determining gene in the diatom Pseudo-nitzschia multistriata. Nature Comunications (2018) 9: 5050. doi: 10.1038/s41467-018-07496-0  


Acknowledgements:
The “GENOMA” platform is an effort from the BIOINforMA-tics service @ Stazione Zoologica Anton Dorhn, Naples