Zostera Marina genome portal
JBrowse – Query page – Genome content overview – Gene content overview – Download section
A Genome Browser access point is available and it includes:
- a JBrowses built based on the genome assembly sequence from RefSeq;
- the gene annotations version from RefSeq;
- all the available ESTs downloaded from dbEST.
Search for specific elements through the dedicated Query page.
Genome content overview:
the following genome assembly are available in the platform:
- GCA_001185155.1 from RefSeq.
Gene content overview:
the following gene annotation is available in the platform:
- GCA_001185155.1 from RefSeq.
| Source | Genome Assembly (FASTA-big file) | Gene Annotation (GFF3) | Gene Sequences (FASTA) | mRNA Sequences (FASTA) | Protein Sequences (FASTA) |
| RefSeq | GCA_001185155.1 | GCA_001185155.1 | download | download | download |
Genome Assembly: FASTA file of all the chromosome/scaffolds/contigs;
Gene Annotation: GFF file containing information about all the annotated genes, mRNAs, UTRs, CDSs;
Gene Sequences: FASTA file of all the gene sequences;
mRNA Sequences: FASTA file of all the mRNA sequences;
Protein Sequences: FASTA file of all the protein sequences.